Agent Skills Index

Directory / Scientific Agent Skills (K-Dense) / pyopenms

pyopenms

skill Science, research & learning

Processes mass spectrometry data with pyOpenMS. Supports proteomics and metabolomics workflows—feature detection, peptide/protein identification, label-free quantification, adduct/accurate-mass annotation, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. For simple spectral comparison and small-molecule library matching use matchms.
Description from the SKILL.md front matter.

Information source

Copied from the Scientific Agent Skills (K-Dense) catalog (K-Dense-AI/scientific-agent-skills), maintained by K-Dense Inc..

Links are pinned to commit 593377b (2026-10-19), the version we synced. Not reviewed by us.

Install

GitHub CLI v2.90+ (Copilot by default)
gh skill install K-Dense-AI/scientific-agent-skills pyopenms
For Claude Code
gh skill install K-Dense-AI/scientific-agent-skills pyopenms --agent claude-code
For Codex
gh skill install K-Dense-AI/scientific-agent-skills pyopenms --agent codex

Commands follow each host's documentation (Any Agent Skills host (Claude Code, Codex, Cursor, Gemini CLI, Copilot…) docs). gh skill needs GitHub CLI 2.90 or later and is in public preview.

Listed from K-Dense Inc.'s catalog, not reviewed by us. Read the source before installing.

Catalog
Scientific Agent Skills (K-Dense)
Information source
SKILL.md in K-Dense-AI/scientific-agent-skills
Author
K-Dense Inc.
Source code
K-Dense-AI/scientific-agent-skills
License
3 clause BSD
Repository stars
52,882 for K-Dense-AI/scientific-agent-skills (the whole catalog repo)
Version
3.0
Added to catalog
Not tracked for this source
Last change
2026-10-19 (last push to the repo)

What it contains

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