Agent Skills Index

Directory / Scientific Agent Skills (K-Dense) / alphagenome

alphagenome

skill Science, research & learning

Looks up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18 SHAP feature attributions, plus raw and quantile scores for RNA-seq, DNase, ATAC, ChIP-TF, ChIP-histone, CAGE, PRO-cap, splicing, polyadenylation and contact-map tracks), scores variants or scans windows on demand with the AlphaGenome model for human and mouse (variant scoring, in silico mutagenesis, REF-versus-ALT track prediction), and builds Atlas website deep links. Use when the user mentions AlphaGenome, AlphaGenome Atlas, AVI or AlphaGenome Variant Impact, DeepMind variant effect prediction, or wants to prioritise or mechanistically interpret non-coding, regulatory, splicing, enhancer, promoter, or chromatin-accessibility effects of SNVs from a VCF, credible set, or region. Research use only; not a clinical tool.
Description from the SKILL.md front matter.

Install

GitHub CLI v2.90+ (Copilot by default)
gh skill install K-Dense-AI/scientific-agent-skills alphagenome
For Claude Code
gh skill install K-Dense-AI/scientific-agent-skills alphagenome --agent claude-code
For Codex
gh skill install K-Dense-AI/scientific-agent-skills alphagenome --agent codex

Commands follow each host's documentation (Any Agent Skills host (Claude Code, Codex, Cursor, Gemini CLI, Copilot…) docs). gh skill needs GitHub CLI 2.90 or later and is in public preview.

Listed from K-Dense Inc.'s catalog, not reviewed by us. Read the source before installing.

Catalog
Scientific Agent Skills (K-Dense)
Author
K-Dense Inc.
Source code
K-Dense-AI/scientific-agent-skills
License
MIT
Repository stars
52,795 for K-Dense-AI/scientific-agent-skills (the whole catalog repo)
Version
1.2
Added to catalog
Not tracked for this source
Last change
2026-10-19 (last push to the repo)

What it contains

Similar in Science, research & learning