Agent Skills Index

Directory / Scientific Agent Skills (K-Dense) / pydeseq2

pydeseq2

skill Science, research & learning

Performs bulk RNA-seq differential expression analysis with PyDESeq2, including count validation, formula designs, explicit contrasts, Wald tests, FDR correction, coefficient-matched LFC shrinkage, and result visualization. Use for PyDESeq2 or Python DESeq2 workflows with biological replicates.
Description from the SKILL.md front matter.

Information source

Copied from the Scientific Agent Skills (K-Dense) catalog (K-Dense-AI/scientific-agent-skills), maintained by K-Dense Inc..

Links are pinned to commit 593377b (2026-10-19), the version we synced. Not reviewed by us.

Install

GitHub CLI v2.90+ (Copilot by default)
gh skill install K-Dense-AI/scientific-agent-skills pydeseq2
For Claude Code
gh skill install K-Dense-AI/scientific-agent-skills pydeseq2 --agent claude-code
For Codex
gh skill install K-Dense-AI/scientific-agent-skills pydeseq2 --agent codex

Commands follow each host's documentation (Any Agent Skills host (Claude Code, Codex, Cursor, Gemini CLI, Copilot…) docs). gh skill needs GitHub CLI 2.90 or later and is in public preview.

Listed from K-Dense Inc.'s catalog, not reviewed by us. Read the source before installing.

Catalog
Scientific Agent Skills (K-Dense)
Information source
SKILL.md in K-Dense-AI/scientific-agent-skills
Author
K-Dense Inc.
Source code
K-Dense-AI/scientific-agent-skills
License
MIT
Repository stars
52,882 for K-Dense-AI/scientific-agent-skills (the whole catalog repo)
Version
1.7
Added to catalog
Not tracked for this source
Last change
2026-10-19 (last push to the repo)

What it contains

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