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Life Sciences NGS Analysis

plugin Science, research & learningCodex category: Education & Research

Guided NGS intake, local execution, and public-pipeline routing for BCL, FASTQ, DNA variant, RNA-seq, single-cell, epigenomics, amplicon, and metagenomics analyses, with deeper decision skills for high-risk assay branches.
Description from the marketplace entry / plugin manifest.

Install

In Codex CLI: open the plugin browser, pick the "Codex official" marketplace, then Life Sciences NGS Analysis
/plugins

Commands follow each host's documentation (OpenAI Codex / ChatGPT docs). gh skill needs GitHub CLI 2.90 or later and is in public preview.

Listed from OpenAI's catalog, not reviewed by us. Read the source before installing.

Catalog
Codex official plugins (openai-curated)
Author
OpenAI
Source code
openai/plugins
Homepage
openai.com/
License
MIT
Repository stars
7,502 for openai/plugins (the whole catalog repo)
Version
1.0.3
Added to catalog
2026-06-03
Last change
2026-06-08
Account connection
Asked on install
Capabilities (manifest)
Interactive, Read, Write

What it contains

Skills: ngs-amplicon-microbiome, ngs-analysis-router, ngs-atacseq-peaks-qc, ngs-bcl-to-fastq, ngs-bulk-rnaseq, ngs-bulk-rnaseq-counts-qc, ngs-bulk-rnaseq-differential-expression, ngs-chip-cutrun-peaks-qc, ngs-dna-germline-variants, ngs-dna-somatic-variants, ngs-dna-umi-panel-variants, ngs-dna-variant-calling, ngs-epigenomics-peaks, ngs-fastq-qc, ngs-runtime-env, ngs-scrna-seq, ngs-shotgun-metagenomics, scrna-seq-qc

Keywords: ngs, sequencing, bioinformatics, fastq, bcl, rnaseq, scrnaseq, variant-calling, atacseq, chipseq, microbiome, metagenomics

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